A homogeneous water-soluble polysaccharide APS-W1, (2 -> 1)-beta-D-fructofuranosan, with an average molecular weight of 3.9 kDa, was isolated and characterized from the roots of Saussurea costus. Five sulfated derivatives of APS-W1 with different degrees of sulfation were prepared and they showed strong inhibitory effect on the complement activation through the classical pathway (CP50: 2.2-18.9 mu g/mL; 8.3 mu g/mL for heparin) and alternative pathway (AP(50): 11.4-115.8 mu g/mL; 89.2 mu g/mL for heparin). Mechanism studies by using complement-depleted sera indicated that sulfated derivatives with different positions of sulfation targeted to different complement proteins. Meanwhile the sulfated derivatives have limited anticoagulant effect based on re-calcification time and thrombin time. These results suggested that the sulfated derivatives prepared from APS-W1 could be promising potential complement inhibitors for the treatment of diseases caused by an over-activated complement system. (C) 2014 Elsevier Ltd. All rights reserved.